XIAO Cui-hong,SUN Dong-mei,TANG Hui,et al.Molecular Deversity and Characterization of Nitrite Reductase Genes from Continuous and Rotational Cropping Soybean[J].Soybean Science,2012,31(03):425-430.[doi:10.3969/j.issn.1000-9841.2012.03.018]
连作与轮作大豆土壤反硝化细菌多样性与组成结构
- Title:
- Molecular Deversity and Characterization of Nitrite Reductase Genes from Continuous and Rotational Cropping Soybean
- 文章编号:
- 1000-9841(2012)03-0425-06
- 分类号:
- S565.1
- 文献标志码:
- A
- 摘要:
- 应用PCR-RFLP方法对连作与轮作大豆土壤中反硝化微生物种群和分类进行研究。结果2种土壤样品中均可检测到反硝化微生物存在。从2种土壤中获取268个nirS基因克隆,46种基因型,其中连作土壤中有29种基因型,轮作土壤中有34种基因型,分析结果显示2种土壤样品中均有优势菌群存在,并且连作土壤样品中反硝化细菌的优势菌群略多于轮作土壤样品。序列同源性分析显示nirS基因克隆序列与已知反硝化微生物具有较远的亲缘关系。结果提示:与轮作大豆相比,连作大豆土壤中反硝化微生物的遗传多样性和组成有所改变,类群的结构组成易受耕作方式影响。
- Abstract:
- Gene sequence analysis of nitrite reductases was performed on continuous cropping and rotational cropping soils of soybean to assess their incidence in different bacterial taxa and their taxonomical value.NirS gene fragments could be amplified from both soils.A total of 268 nirS clones were detected by restriction fragment length polymorphism(RFLP)analysis and obtained 29 and 34 distinct nirS clones in continuous cropping and rotational cropping soils respectively.A dominant nirS pattern,a single dominant nirS restriction pattern of rotational cropping,was observed in both samples.Beside above pattern,another two dominant patterns were also detected in continuous cropping soil.Many of the sequences belonged to dominant pattern were not closely related to previously observed genes and some phylogenetically related sequences were obtained from similar samples.The results indicated that the continuous cropping and rotational cropping soils contained novel nirS sequences,functional diversity of nirS genes changed in the two type soils.
参考文献/References:
[1]Liu P Y.Study on soybean continuous cropping in Heilongjiang province[J].Heilongjiang Agricultural Science,2001(3):31-35.(in Chinese with English abstracts) [2]Fan J,Hao M.Effects of long-term rotations and fertilizations on soil microflora[J].Research of Soil and Water Conservation,2003,10(1):88-114.(in Chinese with English abstracts) [3]Tiedje J M.Ecology of denitrification and dissimilatory nitrate reduction to ammonium[M].Biology of Anaerobic Microorganisms,1988:179-244. [4]Braker G,Fesefeldt A,Witzel K P.Development of PCR primer systems for amplification of nitrite reductase genes(nirKand nirS)to detect denitrifying bacteria in environmental samples[J].Applied and Environmental Microbiology,1998,64:3769-3775. [5]Bear F E.Chemistry of the soil[M].New York:Reinhold Publishing Co,1955. [6]Desantis J,Egger K N.Molecular diversity of nifHgenes from bacteria associated with high arctic dwarf shrubs[J].Microbial Ecology,2006,51:516-525. [7]Magurran A.Ecological diversity and its measurement[M].London:Chapman and Hall,1998. [8 Normand P,Simonet P,Bardin R.Conservation of?nifsequences in Frankia[J].Molecular Gene Genetics,1998,213:238-246. [9]Hughes J,Hellmann J,Ricketts T,et al.Counting the uncountable:statistical approaches to estimating microbial diversity[J].Applied Environmental Microbiology,2001,67:4399-4406. [10]Thompson J,Gibson T,Plewniak F,et al.The CLUSTAL_X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools[J].Nucleic Acids Research,1997,25:4876-4882. [11]Kumar S,Tamura K,Jakobsen I B,et al.Molecular evolutionary genetics analysis software[J].Bioinformatics,2001,17:1244-1245. [12]〖JP3〗Olaya R R,Rosalia T,Librado J G,et al.Diversity of the nitrite reductase gene nirSin the sediment of a free-water surface constructed wetland[J].International Microbiology,2007,10:253-260. [13]Braker G,Zhou J,Wu L,et al.Tiedje,Nitrite reductase genes(nirKand nirS)as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities[J].Applied and Environmental Microbiology,2000,66:2096-1104. [14]Nogales B,Timmis K N,Nedwell D B,et al.Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from Mrna[J].Applied and Environmental Microbiology,2002,68:5017-5025. [15]Heylen K,Gevers D,Vanparys B,et al.The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers[J].Environmental Microbiology,2006,11:2012-2021. [16]PrieméA,Braker G,Tiedje J M.Diversity of nitrite reductase(nirKand nirS)gene fragments in forested upland and wetland soils[J].Applied and Environmental Microbiology,2002,68:1893-1900. [17]Yan T,Matthew W F,Wu L Y,et al.Molecular diversity and characterization of nitrite reductase gene fragments(nirKand nirS)from nitrate-and uranium-contaminated groundwater[J].Environmental Microbiology,2003,5:13-24.
相似文献/References:
[1]刘章雄,李卫东,孙石,等.1983~2010年北京大豆育成品种的亲本地理来源及其遗传贡献[J].大豆科学,2013,32(01):1.[doi:10.3969/j.issn.1000-9841.2013.01.002]
LIU Zhang-xiong,LI Wei-dong,SUN Shi,et al.Geographical Sources of Germplasm and Their Nuclear Contribution to Soybean Cultivars Released during 1983 to 2010 in Beijing[J].Soybean Science,2013,32(03):1.[doi:10.3969/j.issn.1000-9841.2013.01.002]
[2]李彩云,余永亮,杨红旗,等.大豆脂质转运蛋白基因GmLTP3的特征分析[J].大豆科学,2013,32(01):8.[doi:10.3969/j.issn.1000-9841.2013.01.003]
LI Cai-yun,YU Yong-liang,YANG Hong-qi,et al.Characteristics of a Lipid-transfer Protein Gene GmLTP3 in Glycine max[J].Soybean Science,2013,32(03):8.[doi:10.3969/j.issn.1000-9841.2013.01.003]
[3]王明霞,崔晓霞,薛晨晨,等.大豆耐盐基因GmHAL3a的克隆及RNAi载体的构建[J].大豆科学,2013,32(01):12.[doi:10.3969/j.issn.1000-9841.2013.01.004]
WANG Ming-xia,CUI Xiao-xia,XUE Chen-chen,et al.Cloning of Halotolerance 3 Gene and Construction of Its RNAi Vector in Soybean (Glycine max)[J].Soybean Science,2013,32(03):12.[doi:10.3969/j.issn.1000-9841.2013.01.004]
[4]张春宝,李玉秋,彭宝,等.线粒体ISSR与SCAR标记鉴定大豆细胞质雄性不育系与保持系[J].大豆科学,2013,32(01):19.[doi:10.3969/j.issn.1000-9841.2013.01.005]
ZHANG Chun-bao,LI Yu-qiu,PENG Bao,et al.Identification of Soybean Cytoplasmic Male Sterile Line and Maintainer Line with Mitochondrial ISSR and SCAR Markers[J].Soybean Science,2013,32(03):19.[doi:10.3969/j.issn.1000-9841.2013.01.005]
[5]卢清瑶,赵琳,李冬梅,等.RAV基因对拟南芥和大豆不定芽再生的影响[J].大豆科学,2013,32(01):23.[doi:10.3969/j.issn.1000-9841.2013.01.006]
LU Qing-yao,ZHAO Lin,LI Dong-mei,et al.Effects of RAV gene on Shoot Regeneration of Arabidopsis and Soybean[J].Soybean Science,2013,32(03):23.[doi:10.3969/j.issn.1000-9841.2013.01.006]
[6]杜景红,刘丽君.大豆fad3c基因沉默载体的构建[J].大豆科学,2013,32(01):28.[doi:10.3969/j.issn.1000-9841.2013.01.007]
DU Jing-hong,LIU Li-jun.Construction of fad3c Gene Silencing Vector in Soybean[J].Soybean Science,2013,32(03):28.[doi:10.3969/j.issn.1000-9841.2013.01.007]
[7]张力伟,樊颖伦,牛腾飞,等.大豆“冀黄13”突变体筛选及突变体库的建立[J].大豆科学,2013,32(01):33.[doi:10.3969/j.issn.1000-9841.2013.01.008]
ZHANG Li-wei,FAN Ying-lun,NIU Teng-fei?,et al.Screening of Mutants and Construction of Mutant Population for Soybean Cultivar "Jihuang13”[J].Soybean Science,2013,32(03):33.[doi:10.3969/j.issn.1000-9841.2013.01.008]
[8]盖江南,张彬彬,吴瑶,等.大豆不定胚悬浮培养基因型筛选及基因枪遗传转化的研究[J].大豆科学,2013,32(01):38.[doi:10.3969/j.issn.1000-9841.2013.01.009]
GAI Jiang-nan,ZHANG Bin-bin,WU Yao,et al.Screening of Soybean Genotypes Suitable for Suspension Culture with Adventitious Embryos and Genetic Transformation by Particle Bombardment[J].Soybean Science,2013,32(03):38.[doi:10.3969/j.issn.1000-9841.2013.01.009]
[9]王鹏飞,刘丽君,唐晓飞,等.适于体细胞胚发生的大豆基因型筛选[J].大豆科学,2013,32(01):43.[doi:10.3969/j.issn.1000-9841.2013.01.010]
WANG Peng-fei,LIU Li-jun,TANG Xiao-fei,et al.Screening of Soybean Genotypes Suitable for Somatic Embryogenesis[J].Soybean Science,2013,32(03):43.[doi:10.3969/j.issn.1000-9841.2013.01.010]
[10]刘德兴,年海,杨存义,等.耐酸铝大豆品种资源的筛选与鉴定[J].大豆科学,2013,32(01):46.[doi:10.3969/j.issn.1000-9841.2013.01.011]
LIU De-xing,NIAN Hai,YANG Cun-yi,et al.Screening and Identifying Soybean Germplasm Tolerant to Acid Aluminum[J].Soybean Science,2013,32(03):46.[doi:10.3969/j.issn.1000-9841.2013.01.011]
[11]盖志佳,范文婷,于敦爽,等.连作大豆化感作用研究进展[J].大豆科学,2012,31(01):141.[doi:10.3969/j.issn.1000-9841.2012.01.032]
GAI Zhi-jia,FAN Wen-ting,YU Dun-shuang,et al.Allelopathy in Continuous Cropping Soybean[J].Soybean Science,2012,31(03):141.[doi:10.3969/j.issn.1000-9841.2012.01.032]
[12]王孟雪,张玉先.麦/玉/豆轮作制度下不同施肥措施对大豆产量的影响[J].大豆科学,2009,28(06):1040.[doi:10.11861/j.issn.1000-9841.2009.06.1040]
WANG Meng-xue,ZHANG Yu-xian.Fertilization Measures Affects Soybean Yield under Wheat-Maize-Soybean Rotation Cropping[J].Soybean Science,2009,28(03):1040.[doi:10.11861/j.issn.1000-9841.2009.06.1040]
[13]薛庆喜.作物茬口对缓解大豆连作危害效果的研究[J].大豆科学,2010,29(01):68.[doi:10.11861/j.issn.1000-9841.2010.01.0068]
XUE Qing-xi.Effects of Crop Stubbles on Alleviating the Damages by Continuous Cropping Soybean[J].Soybean Science,2010,29(03):68.[doi:10.11861/j.issn.1000-9841.2010.01.0068]
[14]张喜林,周宝库,高中超,等.不同比例氮、磷、钾配合施用对白浆土区连作大豆生育性状及产量的影响[J].大豆科学,2010,29(04):659.[doi:10.11861/j.issn.1000-9841.2010.04.0659]
ZHANG Xi-lin,ZHOU Bao-ku,GAO Zhong-chao,et al.Effect of Different Proportion of N,P and K on Agronomic Traits and Yield of Continuous Planting Soybean in White Paste Soil[J].Soybean Science,2010,29(03):659.[doi:10.11861/j.issn.1000-9841.2010.04.0659]
[15]王树起,韩晓增,乔云发,等.寒地黑土大豆轮作与连作不同年限土壤酶活性及相关肥力因子的变化[J].大豆科学,2009,28(04):611.[doi:10.11861/j.issn.1000-9841.2009.04.0611]
WANG Shu-qi,HAN Xiao-zeng,QIAO Yun-fa,et al.Variation of Soil Enzymes Activity and Relevant Nutrients at Different Years of Soybean (Glycine max L.)Rotation,Alternate and Continuous Cropping[J].Soybean Science,2009,28(03):611.[doi:10.11861/j.issn.1000-9841.2009.04.0611]
[16]薛庆喜,杨思平,张玉春,等.不同作物茬口对连作大豆产量及农艺性状的影响[J].大豆科学,2009,28(01):72.[doi:10.11861/j.issn.1000-9841.2009.01.0072]
XUE Qing-xi,YANG Si-ping,ZHANG Yu-chun,et al.Effects of Different Crop Stubbles on Yield and Agronomic Characters of Continuous Cropping Soybean[J].Soybean Science,2009,28(03):72.[doi:10.11861/j.issn.1000-9841.2009.01.0072]
[17]李春杰,许艳丽,王喜斌,等.追肥方式对连作大豆生长发育和产量的影响[J].大豆科学,2008,27(06):1003.[doi:10.11861/j.issn.1000-9841.2008.06.1003]
LI Chun-jie,XU Yan-li,WANG Xi-bin,et al.Effect of Top Dressing Fertilizer Patterns on Growth and Yield of Continuous Cropping Soybean[J].Soybean Science,2008,27(03):1003.[doi:10.11861/j.issn.1000-9841.2008.06.1003]
[18]张广娜,陈利军,陈振华,等.大豆轮作与连作对黑钙土酶活性和动力学特性的影响[J].大豆科学,2008,27(05):795.[doi:10.11861/j.issn.1000-9841.2008.05.0795]
ZHANG Guang-na,CHEN Li-jun,CHEN Zhen-hua,et al.Effects of Different Cropping Systems of Soybean on Chernozem Enzyme Activities and Kinetic Parameters[J].Soybean Science,2008,27(03):795.[doi:10.11861/j.issn.1000-9841.2008.05.0795]
[19]刘金波,许艳丽,李春杰,等.大豆连作土壤盆栽大豆根腐病及生长发育状况[J].大豆科学,2008,27(05):806.[doi:10.11861/j.issn.1000-9841.2008.05.0806]
LIU Jin-bo,XU Yan-li,LI Chun-jie,et al.Effect of Long Term Soybean Monoculture on Soybean Root Rot and Soybean Growth and Development in Pot Experiment[J].Soybean Science,2008,27(03):806.[doi:10.11861/j.issn.1000-9841.2008.05.0806]
[20]阎吉昌张奕韩丽梅.连作大豆化感作用研究[J].大豆科学,2002,21(03):214.[doi:10.11861/j.issn.1000-9841.2002.03.0214]
Yan JichangZhang YiHan Limei.THE REVIEWOF CONTINUOUS CROPPING SOYBEAN ALLELOPATHY[J].Soybean Science,2002,21(03):214.[doi:10.11861/j.issn.1000-9841.2002.03.0214]
备注/Memo
Biography: XIAO Cui-hong(1972-), female, lecture, teaching and research in physiology and ecology.