大豆FBL基因家族鉴定及百粒重相关基因挖掘与单倍型分析
- Title:
- Identification of FBL Gene Family, Mining of 100-seed Weight Related Genes and Haplotype Analysis in Soybean
- 摘要:
- F-box蛋白是真核生物SCF E3泛素连接酶的重要组成部分,广泛参与植物的生长发育以及胁迫响应。为探究FBL基因家族在大豆百粒重调控过程中的作用,本研究采用生物信息学方法鉴定FBL家族基因,分析其共线性关系、理化性质及保守基序,利用RNA-seq数据分析大豆FBL基因的组织表达模式及籽粒发育前期的表达模式,选取籽粒发育前期特异表达的4个FBL基因进行qRT-PCR分析和单倍型分析,以阐释大豆FBL基因家族的结构、进化和功能。结果表明:共鉴定到44个大豆FBL基因,将其命名为GmFBL1~GmFBL44,编码的氨基酸数量为284~650 aa,等电点为5.16~8.99,其保守基序高度相似。物种内共线性分析结果表明该基因家族发生了53次复制事件,在进化过程中大豆FBL基因出现了分化。基因表达模式分析结果表明FBL基因家族中12个基因在大豆籽粒中特异表达,其中GmFBL14、GmFBL24、GmFBL25和GmFBL31在籽粒发育前期的两个亲本材料中的表达具有差异,其中GmFBL14和GmFBL25的表达量呈上升趋势,GmFBL24和GmFBL31的表达量先增加后降低。单倍型分析挖掘到GmFBL24在-386 bp处存在1处C/G突变,可能参与调控大豆百粒重。研究结果为解析研究大豆FBL基因家族在百粒重调控中的功能提供了理论依据。
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