|Table of Contents|

Bioinformatics Analysis of Nodulin Family Proteins in Soybean(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2018年01期
Page:
39-44
Research Field:
Publishing date:

Info

Title:
Bioinformatics Analysis of Nodulin Family Proteins in Soybean
Author(s):
WANG Wei-jie 1; CHAI Wen-jing 1; YANG Wen-jiao 2; HOU Ying-qian 2
（1.College of Life Science, North China University of Science and Technology, Tangshan 063210, China; 2.Tangshan Top Bio-Technology Co., Ltd, Tangshan 063002, China.)
Keywords:
Soybean; Nodulin protien; Motif; Phylogenetic analysis
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2018.01.0039
Abstract:
The nodulin protein sequence was downloaded from the database UniprotKB, and 14 nodulin family members were identified by BLAST search in the NCBI database. The basic physicochemical properties, gene structure, protein structure and phylogenetic tree were analyzed by bioinformatics tools. The bioinfoematics analysis indicated fourteen nodulin proteins vary in composition animo acid(72 and 116), isoionic point(94 and 11.59), molecular weight(5 898.87 and 12 465.55), and the fat coefficient(85.94 and 114.12), transmembrane regions(1 and 2) except K7KNK4. The secondary protein structures were mainly composed of α helix and irregular curl. Motifs(1 to 4) were more conserved among 14 motifs, phylogenetic tree constructed by mega 8 were divided into 6 protein groups, A0A0B2P3C8 and I1MWA0 in group Ⅵ also shared the similar three demesional structures.

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Last Update: 2018-03-13