|Table of Contents|

Bioinformatics Analysis and Functional Prediction of Soybean GmIDD and Its Homologous Genes(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2017年04期
Page:
519-524
Research Field:
Publishing date:

Info

Title:
Bioinformatics Analysis and Functional Prediction of Soybean GmIDD and Its Homologous Genes
Author(s):
YANG Xue;  WANG Kuo;  LI Ying-hua;  ZHENG Yan-hong;  YAO Yu-heng;  LI Min-min;  ZHAO Lin;  LI Wen-bin
（Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin 150030, China）
Keywords:
Soybean;  GmIDD;  Zinc finger domain;  Short days
PACS:
-
DOI:
10.11861/j.issn.1000-9841.2017.04.0525
Abstract:
In this study, we used the NCBI and Phytozome databases to retrieve the GmIDD gene homologous gene, and obtained 5 copies of the gene in different chromosomes of soybean. We analyzed the functional domain of the 5 copies of the GmIDD gene.The results showed that the five copies of GmIDD gene contained two C2H2?type(72-92 aa, 114-142 aa), two C2HC type(149-169 aa, 176-195 aa) zinc finger domain. The full sequence of GmIDD transcription factor cDNA was 1 227 bp, encoding 408 amino acids Phylogenetic tree analysis showed that the evolution of other IDD proteins was distant except Glyma14g10940 and Glyma.17G228000 in the five copies of GmIDD, which indicated that there might be some differences in the function of different soybean IDD genes.The results of GmIDD expression by long and short daylight showed that GmIDD gene was induced by short daylight and we speculate that GmIDD may be involved in the regulation of soybean flowering.

References:

［1］任红玉.中国大豆品种生育期性状及光温效应模型的研究［D］. 哈尔滨: 东北农业大学, 2001.(Ren H Y. Study on growth dates characters and photo-thermal models of soybean varieties in China［D］. Harbin: Northeast Agricultural University, 2001.)

［2］高振福, 单维奎 “铁丰18号”大豆易地种植的生态模式研究［J］. 中国油料作物学报, 1983,(3): 18-20. (Gao Z F, Shan W K. Study on ecological model of soybean planting in ‘Tiefeng 18’［J］. Chinese Journal of Oil Crop Sciences, 1983: 18-20.)
［3］吴辉.大豆光周期相关基因GmMS的分离及功能初步分析［D］. 海南: 海南大学, 2012. (Wu H. Cloning and preliminary functional analysis of the photoperiodic-related gene GmMS from soybean［D］. Hainan: Hainan University, 2012)
［4］Zhang Q, Li H, Li R, et al. Association of the circadian rhythmic expression of GmCRY1a with a latitudinal cline in photoperiodic flowering of soybean［J］. Proceedings of the National Academy of Sciences of the United States of America, 2008, 105(52): 21028-21033.
［5］张惠君, 王海英, 刘闯, 等. 不同来源亚有限型大豆品种适应性的比较研究［J］. 大豆科学, 2007, 26(3): 332-337. (Zhang H J, Wang H Y, Liu C, et al.Comparative studies on adaptability of semi-determine soybean varieties from different region［J］. Soybean Science, 2007, 26(3): 332-337.)
［6］徐泽恒. 大豆光敏色素相互作用因子的筛选与功能鉴定［D］. 北京: 中国科学院大学, 2014. (Xu Z H. The screenging and identity of phytochrome interacting factors of soybean［D］. Beijing: University of Chinese Academy of Sciences, 2014.)
［7］Fan S, Zhang D, Xing L, et al. Phylogenetic analysis of IDD gene family and characterization of its expression in response to flower induction in Malus［J］. Molecular Genetics & Genomics, 2017: 1-17.
［8］Seo P J, Ryu J, Kang S K, et al. Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis［J］. Plant Journal for Cell & Molecular Biology, 2011, 65(3): 418-429.
［9］Pagter M, Lefèvre I, Arora R, et al. Quantitative and qualitative changes in carbohydrates associated with spring deacclimation in contrasting Hydrangea, species［J］. Environmental & Experimental Botany, 2011, 72(3): 358-367.
［10］Funck D, Clauss K, Frommer W B, et al. The Arabidopsis CstF64 Like RSR1/ESP1 protein participates in glucose signaling and flowering time control［J］. Frontiers in Plant Science, 2012, 3(4): 80.
［11］Matsubara K, Yamanouchi U, Wang Z X, et al. Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1［J］. Plant Physiology, 2008, 148(3): 1425.
［12］Wolfe S A, Nekludova L, Pabo C O. DNA recognition by Cys2His2?zinc finger proteins ［J］. Annual review of biophysics and biomolecular structure, 2000, 29: 183-212.
［13］Colasanti J, Yuan Z, Sundaresan V. The indeterminate, gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize［J］. Cell, 1998, 93(4): 593.?
［14］赵琳, 罗秋兰, 杨春亮, 等. 大豆在暗诱导条件下差异表达cDNA文库的构建及分析［J］. 大豆科学, 2007, 26(2): 134-139. (Zhao L, Luo Q L, Yang C L. Construction and analysis of differentially expressed cDNA library from soybeans induced by darkness［J］. Soybean Science, 2007, 26(2): 134-139.)

Memo

Memo:
-
Last Update: 2017-08-14