|Table of Contents|

The Advance of Molecular Markers in Soybean(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2015年01期
Page:
148-154,162
Research Field:
Publishing date:

Info

Title:
The Advance of Molecular Markers in Soybean
Author(s):
WANG Yan;  HAN Ying-peng;  LI Wen-bin
Key Laboratory of Soybean Biology in Chinese Ministry of Education/ Key Laboratory of Soybean Biology and Breeding/Genetics of Chinese Agriculture Ministry, Northeast Agricultural University, Harbin 150030, China
Keywords:
Soybean;  Molecular markers;  QTL;  Fine mapping;  Association analysis
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2015.01.0148
Abstract:
With the development and application of functional genomics and high-throughput sequencing technology, molecular breeding has been widely used in soybean breeding researches. Especially with the advances of new techniques (such as eQTL analysis, GWAS, RNA-seq and so on), molecular markers and QTL studies tends to exploit new high-throughput markers, QTL fine mapping and application of new analytical methods, which promote breeding of high quality and multi-resistant soybeans and accelerate the process of soybean breeding. In the present paper we reviewed the technological development and its application of molecular markers in soybean in 2013.

References:

［1］Apuya N R, Frazier B L, Keim P, et a1.Restriction fragment length polymorphisms as genetic markers in soybean, Glycine max (L)merrill［J］. Theoretical and Applied Genetics, 1988, 75:889-901.

［2］Song Q J, Hyten D L, Jia G F, et al.Development and evaluation of SoySNP50K, a high-density genotyping array for soybean［J］. PlosOne, 2013, 8(1): e54985.
［3］Gao M Q, Zhu H Y. Fine mapping of a major quantitative trait locus that regulates pod shattering in soybean［J］. Molecular Breeding, 2013, 32:485-491.
［4］Tuyen D D, Zhang H M, Xu D H. Validation and high-resolution mapping of a major quantitative trait locus for alkaline salt tolerance in soybean using residual heterozygous line［J］.Molecular Breeding, 2013, 31:79-86.
［5］de Oliveira P M, Pedro Ivo V G, Maurílio A M, et al. Associao de marcadores moleculares SNP com o conteúdo de ácido linolênico em sementes de soja［J］. Pesquisa Agropecuária Brasileira, 2013, 48 (3): 263-269.
［6］Fallen B D, Hatcher C N, Allen F L, et al-Soybean seed amino acid content QTL detected using the universal Soy Linkage Panel 1.0 with 1,536 SNPs［J］. Journal of Plant Genome Sciences, 2013, 1 (3): 68-79.
［7］Hu Z B, Zhang H R, Kan G Z, et al. Determination of the genetic architecture of seed size and shape .via. linkage and association analysis in soybean (Glycine max L Merr)［J］.Genetica, 2013, 141:247-254.
［8］Zhang D, Cheng H, Hu Z B, et al. Fine mapping of a major flowering time QTL on soybean chromosome 6 combining linkage and association analysis［J］. Euphytica, 2013, 191(23):23-33.
［9］Akond M, Liu Shiming, Schoener L, et al.A SNP-based genetic linkage map of soybean using the SoySNP6K Illumina Infinium BeadChip Genotyping Array［J］.Journal of Plant Genome Sciences, 2013, 1(3):80-89.
［10］Lee Sungwoo, Rouf Mian M A, McHale Leah K, et al. Novel quantitative trait loci for partial resistance to .Phytophthora sojae.in soybean PI 398841［J］.Theoretical and Applied Genetics, 2013, 126:1121-1132.
［11］Lee Sungwoo, Rouf Mian M A, McHale Leah K, et al. Identification of quantitative trait loci conditioning partial resistance to .Phytophthora sojaein.soybean PI 407861A［J］.Crop Science, 2013, 53(3):1022-1031.
［12］Ellis M L, McHale L K, Paul P A, et al. Soybean germplasm resistant to .Pythium irregulare and molecular mapping of resistance quantitative trait loci derived from the soybean accession PI 424354［J］.Crop Science, 2013, 53(3):1008-1021.
［13］Sun Suli, Kim Moon Young, van Kyujung, et al. QTLs for resistance to Phomopsis seed decay are associated with days to maturity in soybean(Glycine max)［J］.Theoretical Applied Genetics, 2013, 126:2029-2038.
［14］Luckew A S, Leandro L F, Bhattacharyya M K, et al.Usefulness of 10 genomic regions in soybean associated with sudden death syndrome resistance［J］.Theoretical Applied Genetics, 2013, 126:2391-2403.
［15］Kim Myungsik, Diers Brian W. Fine mapping of the SCN resistance QTL cqSCN-006 and cqSCN-007 from .Glycine soja.PI 468916［J］. Crop Science, 2013, 53:775-785.
［16］Pham A T, McNally K, Abdel-Haleem H, et al.Fine mapping and identification of candidate genes controlling the resistance to southern root-knot nematode in PI 96354［J］ Theoretical Applied Genetics, 2013, 126:1825-1838.
［17］Bales C, Zhang G, Liu M, et al. Mapping soybean aphid resistance genes in PI 567598B［J］.Theoretical Applied Genetics, 2013, 126:2081-2091.
［18］Zhang G R, Gu C H, Wang D C. Mapping and validation of a gene for soybean aphid resistance in PI 567537［J］.Molecular Breeding, 2013, 32:131-138.
［19］Jun T H, Mian M A Rouf, Michel A P.Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324［J］.Heredity, 2013, 111:16-22.
［20］Xiao L, Hu Y L, Wang B, et al.Genetic mapping of a novel gene for soybean aphid resistance in soybean (Glycine max［L］ Merr) line P203 from China［J］.Theoretical Applied Genetics, 2013, 126:2279-2287.
［21］Yang Z, Xin D, Liu C, et al. Identification of QTLs for seed and pod traits in soybean and analysis for additive effects and epistatic effects of QTLs among multiple environments［J］. Molecular Genetics and Genomics, 2013, 288:651-667.
［22］Liu Y L, Li Y H, Reif J C, et al. Identification of quantitative trait loci underlying plant height and seed weight in soybean［J］.The Plant Genome, 2013, 6(3):1-11.
［23］Jiang Z, Ding J, Han Y, et al.Identification of QTL underlying mass filling rate at different developmental stages of soybean seed［J］.Euphytica, 2013, 189(2):249-260.
［24］Pathan S M, Vuong Tri, Clark Kerry, et al.Genetic mapping and confirmation of quantitative trait loci for seed protein and oil contents and seed weight in soybean［J］. Crop Science, 2013, 53, 765-774.
［25］Eskandari M, Cober E R, Rajcan I. Genetic control of soybean seed oil: I.QTL and genes associated with seed oil concentration in RIL populations derived from crossing moderately high-oil parents［J］. Theoretical and Applied Genetics, 2013, 126(2):483-495.
［26］Eskandari M, Cober E R, Rajcan I.Genetic control of soybean seed oil: II.QTL and genes that increase oil concentration without decreasing protein or with increased seed yield［J］ Theoretical and Applied Genetics, 2013, 126:1677-1687.
［27］Wang X, Jiang G L, Green M, et al. Quantitative trait locus analysis of unsaturated fatty acids in a recombinant inbred population of soybean［J］.Molecular Breeding, 2014, 33(2):281-296.
［28］Rani A, Kumar V, Rawal R. Identification of simple sequence repeat markers linked to lipoxygenase-1 gene in soybean［J］. Journal of Plant Biochemistry and Biotechnology, 2013, 22(4):488-491.
［29］Lu W, Wen Z, Li H, et al.Identification of the quantitative trait loci (QTL) underlying water soluble protein content in soybean［J］. Theoretical and Applied Genetics, 126(2):425-433.［30］Yesudas C R, Bashir R, Geisler M B, et al.Identification of germplasm with stacked QTL underlying seed traits in an inbred soybean population from cultivars Essex and Forrest［J］. Molecular Breeding, 2013, 31:693-703.
［31］Lestari P, van K, Lee J, et al.Gene divergence of homeologous regions associated with a major seed protein content QTL in soybean［J］.Frontiers in Plant Science, doi: 10.3389/fpls.2013.00176.
［32］Akond M, Richard B, Ragin B, et al. Additional quantitative trait loci and candidate genes for seed isoflavone content in soybean［J］.Journal of Agricultural Science, 2013, 5(11):20-33.
［33］King K E, Lauter N, Lin S F, et al. Evaluation and QTL mapping of phosphorus concentration in soybean seed［J］.Euphytica, 2013, 189(2):261-269.
［34］Santos M A, Geraldi I O, Garcia A A F, et al.Mapping of QTLs associated with biological nitrogen fixation traits in soybean［J］. Hereditas, 2013, 150: 17-25.
［35］Ha B K, Vuong T D, Velusamy V, et al. Genetic mapping of quantitative trait loci conditioning salt tolerance in wild soybean (Glycine soja) PI 483463［J］. Euphytica, 2013, 193:79-88.
［36］King K E, Peiffer G A, Reddy M, et al.Mapping of iron and zinc quantitative trait loci in soybean for association to iron deficiency chlorosis resistance［J］. Journal of Plant Nutrition, 2013, 36:2132-2153.
［37］Zuo Q, Hou J, Zhou B, et al.Identification of QTLs for growth period traits in soybean using association analysis and linkage mapping［J］. Plant Breeding, 2013, 132:317-323.
［38］Tasma I M, Satyawan D, Warsun A, et al.Phylogenetic and maturity analyses of sixty soybean genotypes used for DNA marker development of early maturity quantitative trait loci in soybean［J］.Journal AgroBiogen, 2013, 7(1): 37-46.
［39］高利芳，郭勇，郝再彬，等.大豆株高QTL的“整合”及Overview分析［J］. 遗传，2013，35（2）：215-224.(Gao L F, Guo Y, Hao Z B, et al.Integration and “Overview” analysis of QTLs related to plant height in soybean［J］. Hereditas, 2013, 35(2):215-224.)
［40］谭冰，郭勇，邱丽娟.大豆全基因组分枝相关基因发掘及与QTL共定位［J］. 遗传，2013，35（6）：793-804. (Tan B, Guo Y, Qiu L J.Whole genome discovery of genes related to branching and co-localization with QTLs in soybean ［J］.Hereditas, 2013, 35(6): 793-804.)
［41］牛远，谢芳腾，布素红，等.大豆粒形性状QTL的精细定位［J］. 作物学报，2013，39(4)：609-616.(Niu Y, Xie F T,Bu S H,et al.Fine mapping of quantitative trait loci for seed shape traits in soybean［J］.Acta Agronomica Sinica, 2013，39(4)：609-616).
［42］魏崃，薛永国，王伟威，等. 应用关联分析鉴定大豆对腐霉菌的抗性基因［J］. 大豆科学，2013，32（2）：143-148. (Wei L, Xue Y G, Wang W W, et al. Identification of resistance genes to Pythium species in soybeans by association［J］. Soybean Science, 2013, 32(2): 143-148)
［43］阳小凤，杨永庆，郑桂杰，等.大豆对大豆花叶病毒株系SC6和SC17抗病基因的精细定位［J］.作物学报，2013，39(2)：216-221. (Yang X F, Yang Y Q, Zheng G J, et al. Fine mapping of resistance genes to SMV strains SC6 and SC17 in soybean［J］.Acta Agronomica Sinica, 2013, 39(2): 216-221).
?［44］冯莉君.新的大豆孢囊线虫抗虫基因的发掘和鉴定［J］.科学之友，2013(3)：160-162.(Feng L J. Discover new soybean mosaic insect-resistant gene and identification［J］. Friends of Science Amateurs, 2013(3): 160-162.).
［45］张姗姗，李英慧，李金英，等.优良品系中品03-5373系谱的遗传解析及抗大豆胞囊线虫病相关标记鉴定［J］.作物学报，2013，39(10)：1746-1753. (Zhang S S, Li Y H, Li J Y, et al. Genetic dissection of elite line Zhongpin 03-5373 pedigree and identification of candidate markers related to resistance to soybean cyst nematode ［J］. Acta Agronomica Sinica, 2013, 39(10): 1746-1753.).
［46］黄珊珊.东北春大豆抗蚜关键酶活性测定、遗传分析及QTL定位［D］. 哈尔滨：东北农业大学，2013：33-56. (Huang S S. Determination of key enzyme activity, inheritance and QTL analysis of resistance to soybean aphid ［Aphis glycines Matsumura］ in spring soybean of Northeast China［D］.Harbin: Northeast Agricultural University, 2013:33-56).
［47］杨喆，孙亚男，齐照明，等.大豆荚数性状相关QTL的加性上位性及QE互作效应分析［J］.中国农业大学学报，2013，18(3)：1-13. (Yang Z, Sun Y N, Qi Z M, et al.Analysis of additive effect, epistatic and QE interaction effect for QTL of pod number traits in soybean［J］. Journal of China Agricultural University, 2013, 18(3):1-13.)［48］范冬梅，孙殿君，马占洲，等. 多种环境下大豆单株粒重QTL的定位与互作分析［J］ 作物学报，2013，39(6)：1021-1029.(Fan D M, Sun D J, Ma Z Z, et al.QTL mapping and interaction analysis of seed weight per plant in soybean among different environments［J］ Acta Agronomica Sinica, 2013, 39(6):1021-1029)
［49］孙梦阳，王艳，武林，等.黑龙江省主栽大豆品种脂肪含量分析及SSR分子标记辅助鉴定［J］.大豆科学，2013，32（2）：143-148.(Sun M Y, Wang Y, Wu L, et al. Analysis of oil content underlying major soybean cultivars of Heilongjiang province and SSR molecular marker-assisted identification［J］. Soybean Science,2013,32(2):143-148.)
［50］王涛，杨春燕，赵青松，等.两个大豆开花期QTL定位及对农艺性状的影响分析［J］.华北农学报，2013，28(2):6369.(Wang T, Yang C Y, Zhao X S, et al.Two quantitative trait loci for flowing time and their effect on agronomic traits in soybean［J］.Acta Agriculturae BorealiSinica, 2013, 28(2):63-69)
［51］邢光南，刘泽稀楠，谭连美，等. 大豆叶面茸毛密度和长度的QTL定位［J］. 作物学报，2013，39(1)：12-20. (Xing G N, Liu Z X N, Tan L M, et al.QTL mapping of pubescence density and length on leaf surface of soybean［J］. Acta Agronomica Sinica, 2013, 39(1):12-20)
［52］王吴彬，何庆元，杨红燕，等. 大豆结荚习性、荚色和种皮色相关野生片段分析［J］.作物学报，2013，39(7)：1155-1163.(Wang W B, He Q Y, Yang H Y, et al.Identification of wild segments associated with stem termination, pod color, and seed coat color in soybean［J］.Acta Agronomica Sinica, 2013, 39(7):1155-1163.)
［53］徐艳平.分枝数和种皮色相关QTL的定位及抗旱野生大豆种质的筛选［D］. 长春：吉林农业大学，2013：13-27.(Xu Y P.Mapping the QTL for soybean branch number and seed coat color and screening drought-tolerant wild soybean germplasm［D］.Changchun: Jilin Agricultural University, 2013:13-27)

Memo

Memo:
-
Last Update: 2015-04-13