|Table of Contents|

Bioinformatics Analysis on Transcription Factor Glyma08g02580 and Its Homology Proteins(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2014年05期
Page:
648-653
Research Field:
Publishing date:

Info

Title:
Bioinformatics Analysis on Transcription Factor Glyma08g02580 and Its Homology Proteins
Author(s):
LIU Dong-dong; WANG Yang; BAI Xi
Life Science College of Northeast Agricultural University,Harbin 150030,China
Keywords:
WRKY; Transcription factor; Bioinformatics; Phylogenetic analysis; Gene expression profile
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2014.05.0648
Abstract:
Genes containing the WRKY domain are plant-specific transcriptional regulators and are expressed in various developmental stages and tissues.The most archaic WRKY transcription factors,which may originate some 1.5 billion to 2 billion years ago in eukaryotes,contain two highly conserved WRKY domain.Although all WRKY proteins regulate mainly the expression of target genes by specifically binding to the(T)(T)GACC(A/T)(W box)sequences of their promoter,the biological function of each member is specific.In the study,a bioinformatics analysis on WRKY family genes in Glycine max was performed.Based on bioinformatics methods,taking advantage of soybean database combined with public database(NCBI，TIGR，TAIR)，196 WRKY protein from soybean genome and download gene expression profile from GEO database were identified.Meanwhile,197 homology protiens of Glyma08g02580.1 in other plants were identified,such as Arabidopsis and Oryza sativa.The phylogenetic of 197 WRKY family protein sequence and domain characteristics were analyzed.The results of the investigation could be definitely provide a significant foundation for further research on function analysis of Glycine max WRKY gene family.

References:

［1］Chen L,Song Y,Li S,et al.The role of WRKY transcription facotors in plant abiotic stresses[J].Biochimica et Biophysica Acta,2012,1819(2):120-128.

[2]Eulgem T,Rushton P J,Schmelzer E,et al.Early nuclear events in plant defence signaling:Rapid gene activation by WRKY transcription factors[J].The EMBO Journal,1999,18:4689-4699.
[3]贾翠玲.葡萄WRKY基因超家族的进化分析[D].大连：辽宁师范大学,2010.(Jia C L.Phylogenitic analyses of vitis vinifera WRKY gene superfamily[D].Dalian:Liaoning Normal University,2010.)
[4]Ciolkowski I,Wanke D,Birkenbihl R P,et al.Studies on DNA-binding selectivity of WRKY transcription facotors lend structural clues into WRKY-domain function[J].Plant Molecular Biology,2008,68(1/2):81-92.
[5]Yokotani N,Sato Y,Tanabe S,et al.WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance[J].Journal of Experimental Botany,2013,64(16):5085-5097.
[6]Lan A,Huang J,Zhao W,et al.A salicylic acid-induced rice(Oryza sativa L.)transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana[J].Plant Biology,2013,15(3):452-461.
[7]Yu F,Huaxia Y,Lu W,et al.GhWRKY15,a member of the WRKY transcription factor family identified from cotton(Gossypium hirsutum L.),is involved in disease resistance and plant development[J].BMC Plant Biology,2012,12；12:144.
[8]Ulker B,Somssich I E.WRKY transcription factors:from DNA binding towards biological function[J].Current Opinion in Plant Biology,2004,7(5):491-498.
[9]宋钰,荆绍娟，余迪求.水稻WRKY转录调控因子基因功能研究进展[J].中国水稻科学，2009,23(5):447-455.(Song Y,Jing S J,Yu D Q.Research progress on function analysis of rice WRKY genes[J].Chinese Journal of Rice Science,2009,23(5):447-455.)
[10] Nakayama A,Fukushima S,Goto S,et al.Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice[J].BMC Plant Biology,2013；13:150 doi:10.1186/1471-2229-13-150.
[11] Dong J,Chen C,Chen Z.Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response[J].Plant Molecular Biology,2002,51:21-37.
[12] Lan A,Huang J,Zhao W,et al.A salicylic acid-induced rice(Oryza sative L.)transcription factor OsWRKY77 in disease resistance of Arabidopsis thaliana[J].Plant Biology,2013,15(3):452-461.
[13] Hwang S H,Yie S W,Hwang D J.Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens[J].Plant Science,2011,181(3):316-323.
[14] Yoda H,Ogawa M,Yamaguchi Y,et al.Identification of early-responsive genes associated with the hypersensitive response to tobacco mosaic virus and characterization of a WRKY-type transcription factor in tobacco plants[J].Molecular Genet Genomics,2002,267(2):154-161.
[15] Mare C,Mazzucotelli E,Crosatti C,et al.Hv-WRKY38:A new transcription factor involved in cold and drought response in barley[J].Plant Molecular Biology,2004,55(3):399-416.
[16]田云，卢向阳，彭丽莎,等.植物WRKY转录因子机构特点及其生物学功能[J].遗传，2006,28(12):1607-1612.(Tian Y,Lu X Y,Peng L S,et al.The structure and function of plant WRKY transcription factors[J].Hereditas,2006,28(12):1607-1612.)
[17] Yu D Q,Chen L G,Zhang L P.Transcription factors WRKY superfamily:Origin,structure and function[J].Acta Botanica Yunnanica,2006,28(1):69-77.
[18] Yu D,Chen C,Chen Z.Evidence for an important role of WRKY DNA binding protein in the regulation of NPR1 gene expression[J].The Plant Cell,2001,13:1527-1539.
[19] Luo X,Bai X,Zhu D,et al.Expression of wild soybean WRKY20 in Arabidopsis enhances drought tolerance and regulates ABA signalling[J].Journal of Experimental Botany,2013,64(8)：2155-2169.
[20] Yamasaki K,Kigawa T,Seki M,et al.DNA-binding domains of plant-specific transcription facotors:structure,function,and evolution[J].Trends Plant Science,2013,18(5):267-276.
[21] Cheng Y,Zhou Y,Yang Y,et al.Structural and functional analysis of VQ motif-containing proteins in Arabdopsis as interacting proteins of WRKY transcription factors[J].Plant Physiology,2012,159(2):810-825.
[22]李蕾，谢丙炎，戴小枫，等.WRKY转录因子及其在植物防御反应中的作用［J］.分子植物育种，2005，3（3）：401-408.(Li L,Xie B Y,Dai X F,et al.WRKY transcription factors and their roles in plant defense response[J].Molecular Plant Breeding,2005，3(3):401-408）.
[23]张颖，蒋卫杰，凌键，等.WRKY转录因子表达谱的研究进展[J].基因组学与应用生物学，2009,28（4)：803-808.(Zhang Y,Jiang W J,Ling J,et al.Advance on expression profile of transcription factor WRKY[J].Genomics and Applied Biology,2009,28(4):803-808.)
[24]Xiong W,Xu X,Zhang L,et al.Genome-wide analysis of the WRKY gene family in physic nut(Jatropha curcas L.)[J].Gene,2013,524(2):124-132.

Memo

Memo:
-
Last Update: 2014-12-24