|Table of Contents|

Bioinformatics Analysis of GmSRK Homologous Genes in Soybean Genome(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2014年04期
Page:
497-501
Research Field:
Publishing date:

Info

Title:
Bioinformatics Analysis of GmSRK Homologous Genes in Soybean Genome
Author(s):
QIAN Xue; SUN Xiao-li; DUANMU Hui-zi; CHENG Shu-fei; CAI Hua; JI Wei; ZHAO Chao-yue; ZHU Yan-ming
Key Laboratory of Agricultural Biological Functional Genes,Northeast Agricultural University,Harbin 150030,China
Keywords:
Soybean; SRK; Receptor-like kinases; Bioinformatics
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2014.04.0497
Abstract:
We identified the Glycine max GmSRK gene by using BLASTP with the amino acid sequence of Glycine soja GsSRK gene.By using the phytozome database and some softwares such as MEGA5.0 and ClustalX,we confirmed the GmSRK homologous genes,Glyma12g21640 and Glyma08g06550.Bioinformatics analysis indicated that the three genes were located in different chromosome,all of them had 6 introns and 7 exons,and belonged to the G-type lectin receptor-like kinase family,which was characterized by four conserved domains:B-lectin,S_locus_glycop,PAN_AP and S_TKc.Analysis of phylogenetic relationship showed that GmSRK and Glyma12g21640 had the closes trelationship,and grouped into the same cluster with homologous proteins of Phaseolus vulgaris,Medicagotruncatula.Glyma08g06550 had close relationship with Arabidopsis thaliana RLKs.

References:

[1]Jeremy S,Steven B C,Jessica S,et al.Genome sequence of the palaeopolyploid soybean[J].Nature,2010,463:178-183.

[2]闫锋，祝传书，庞保平.植物类受体蛋白激酶的研究进展[J].西北植物学报，2009,29(4):851-858.(Yan F,Zhu C S,Pang B P.Advancein research of plant receptor-1ike protein kinases[J].Acta Botanica Boreale-Occidentalia Sinica,2009,29(4):851-858.)

[3]Stevan R H,Miller W T.Receptor tyrosine kinases:mechanisms of activation and signaling[J].Current Opinion in Cell Biology,2007,19(2):117-123.

[4]张兆沛，王志伟，张惠蓉.植物类受体蛋白激酶研究概况[J].山西农业科学，2009,37(8):75-78.(Zhang Z P,Wang Z W,Zhang H R.Research advance in receptor-like protein kinases of plant[J].Journal of Shanxi Agricultural Sciences,2009,37(8):75-78.)

[5]Herve C,Dabos P,Galaud J P,et al.Characterization of an Arabidopsis thalianagene that defines a new class of putative plantreceptor kinases with an extracellular lectin-liked domain[J].Journal of Molecular Biology,1996,258(5):778-788.

[6]Wan J R,Ami P,Melanie M,et al.A lectin receptor-like kinase is required for pollen development in Arabidopsis[J].Plant Molecular Biology,2008,67(5):469-482.

[7]Chen X W,Li S G,Xu J C,et al.Identification of two blast resistance genes in a rice variety,Digu[J].Journal of Phytopathology,2004,152(2):77-85.

[8]Amita J,Hung Q D,Neha V,et al.Pea lectin receptor-like kinase promotes high salinity stress tolerance in bacteria and expresses in response to stress in planta[J].Glycoconjugate Journal,2009,27(1):133-150.

[9]Navarro-Gochicoa M T,Camut S,Timmers A C,et al.Characterization of four lectin-like receptor kinases expressed in roots of Medicago truncatula.Structure,location,regulation of expression,and potential role in the symbiosis with Sinorhizobiummeliloti[J].Plant Physiology,2003,133(4):1893-1910.

[10]Sun X L,Yu Q Y,Tang L L.GsSRK,a G-type lectin S-receptor-like serine/threonine protein kinase,is a positive regulator of plant tolerance to salt stress[J].Journal of Plant Physiology,2013,170(5):505-515.

[11]郭安源，朱其慧，陈新，等.GSDS：基因结构显示系统[J].遗传，2007,29(8):1023-1026.(Guan A Y,Zhu Q H,Chen X,et al.GSDS:a gene structure display server[J].Hereditas,2007,29(8):1023-1026.)

[12]邓克勤.植物凝集素类受体蛋白激酶LecRK-b2的生物信息学分析及基因功能研究[D].长沙：湖南大学，2009.(Deng K Q.Bioinformatic analysis and function investigation of Arabidopsis?lectin receptor like kinase lecrk-b2[D].Changsha:Hunan University,2009.)

[13]张春华，上官凌飞，俞明亮，等.桃NAC基因家族生物信息学分析[J].江苏农业学报，2012,28(2):406-414.(Zhang C H,Shangguan L F,Yu M L,et al.Bioinformatics analysis of NAC gene family in peach[J].Jiangsu Journal of Agricultural Sciences,2012,28(2):406-414.)

[14]Bouwmeester K,Govers F.ArabidopsisL-type lectin receptor kinases:phylogeny,classification,and expression profiles[J].Journal of Experimental Botany,2009,60(15):4383-4396.

[15]王育，叶佳卓，常洪平.植物凝集素类受体激酶的研究进展[J].生命科学研究，2012,16(3):266-271.(Wang Y,Ye J Z,Chang H P.Progresses on lectin receptor like kinase[J].Life Science Research,2012,16(3):266-271.)

[16]Takasaki T,Hatakeyama K,SuzukiG,et al.The S receptor kinase determines self-incompatibility in Brassicastigma[J].Nature,2000,403(6772):913-916.


Memo

Memo:
-
Last Update: 2014-09-11