|Table of Contents|

Phylogenetic Analysis of Vegetable-type (Edamame) and Grain-type Soybean[Glycine max(L.) Merr.]Cultivars Through ISSR Markers(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2008年05期
Page:
732-739
Research Field:
Publishing date:

Info

Title:
Phylogenetic Analysis of Vegetable-type (Edamame) and Grain-type Soybean[Glycine max(L.) Merr.]Cultivars Through ISSR Markers
Author(s):
XIE Fu-ti 1; Takahata Yoshihito2; Ohno Yasuo3
1College of Agriculture，Shenyang Agricultural University，Shenyang 110161，Liaoning，China；
2Faculty of Agriculture，Iwate University，020-8550，Japan；3Sato Masayuki Seed Co.，Yahaba-cho 02-0891，Japan
Keywords:
Soybean; ISSR Marker; Diversity
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2008.05.0732
Abstract:
ISSR markers are reported to be highly polymorphic and to useful in studies on genetic diversity.Analysis of the diversity in edamame cultivars would aid breeders by making a cross choice of parents.Thirty-seven edamame cultivars/lines and 13 grain-type ones were used in ISSR analysis.Of a total of 50 ISSR primers used 11 primers showed no amplified fragments.Another 39 primers produced 132 bands，of which 81 were polymorphic，accounting for 61.4%.The number of amplified bands varied from 1 to 7，with a size range from 830 to 3530 bp.The average numbers of bands per primer and polymorphic ones were 3.3 and 2.1，respectively.A dendrogram based on UPGMA analysis grouped 50 cultivars/lines into 3 main clusters.Taikadaizu，fasciated-type soybean，appeared to be distinct from all others.Group B comprised 7 grain-type cultivars，most of them developed in China.Group C comprised all Japanese edamame cultivars/lines and 4 grain-type ones.Genotypes grouped in the group C were divided into several subgroups.Among the subgroups，cultivars grouped in the same subgroups had identical characters，for example a subgroup comprised all cultivars with brown hilum and seed coat，white flower and the pod which was not easy to open.Selected cultivars and their original cultivars showed closely relationships in the dendrogram.These results indicated that the dendrogram based on ISSR reflected the genetic relationships of edamame cultivars，and the genetic diversity existed between edamame and grain-type soybeans.The preservation of edamame germplasms would be useful for the better soybean project in the future.

References:

[1]Fehr W R，Caviness C E，Burmood D T，et al.Stage of development descriptions for soybeans[Glycine max(L.) Merrill][J].Crop Science，1971,11:929-931.

[2]Masuda R.Quality requirement and improvement of vegetable soybean\M]//Shanmugasundaram S.Vegetable soybean：Research needs for production and quality improvement.Taiwan：Asian Vegetable Research and Development Center，1991:92-102.
[3] Brar G S，Carter Jr T E.Soybean Glycine max(L.) Merril.[M]//Kalloo G，Bergh B O.Genetic improvement of vegetable crops.New York: Pergamon Press，1993:427-763.
[4]Monma M，Terao J，Ito M，et al.Carotenoid components in soybean seeds varying with seed color and maturation stage[J].Bioscience，Biotechnology，and Biochemistry，1994，58：926-930.
[5] Lin C C.Frozen Edamame：Global market conditions[C]//Lumpkin T A，Shanmugasundaram S.Int.Vegetable Soybean Conference，2nd，Tacoma，WA.10 12 Aug.2001.Washington State Univ.，Pullman，WA，2001:93-96.
[6] Rao M S S，Bhagsari A S，Mohamed A I.Fresh green seed yield and seed nutritional traits of vegetable soybean genotypes[J].Crop Science，2002，42:1950-1958.
[7] Pradeep Reddy M，Sarla N，Siddiq E A.Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding[J].Euphytica，2002，128:9-17.
[8]Joshi S P，Gupta V S，Aggarwal R K，et al.Genetic diversity and phylogenetic relationship as revealed by inter-simple sequence repeat(ISSR)polymorphism in the genus Oryza[J].Theoretical and Applied Genetics，2000，100:1311-1320.
[9]Qian W，Ge S，Hong D Y.Genetic variation within and among populations of a wild Oryza granulata from China detected by RAPD and ISSR markers[J].Theoretical and Applied Genetics，2001，102:440-449.
[10] Kantety R V，Zeng X P，Bennetzen J L，et al.Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat(ISSR) amplification[J].Molecular Breeding，1995,1:365-373.
[11]Ajibade S R，Weeden N F，Chite S M.Inter-simple sequence repeat analysis of genetic relationships in the genus Vigna[J].Euphytica，2000,111:47-55.
[12]McGregor C E，Lambert C A，Greyling M M，et al.A comparative assessment of DNA fingerprinting techniques (RAPD，ISSR，AFLP and SSR) in tetraploid potato(Solanum tuberosum L.) germplasm[J].Euphytica，2000,113:135-144.
[13]Moreno S，Martin J P，Ortiz J M.Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm[J].Euphytica，1998,101:117-125.
[14]Sanker A A，Moore G A.Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of genetic linkage map[J].Theoretical and Applied Genetics，2001,102:206-214.
[15]Gai J Y.Plant breeding：Crop species[M].Beijing:China Agriculture Press，1997.(In Chinese)
[16]Cui Z，Gai J，Carter Jr T E，et al.The released Chinese soybean cultivars and their pedigree analyses (1923 1995)[M].Beijing:China Agriculture Press，1998.
[17]Cui Z，Carter Jr T E，Burton J W.Genetic base of 651 Chinese soybean cultivars released during 1923 to 1995[J].Crop Science，2000，40:1470-1481.
[18]Cui Z，Carter Jr T E，Burton J W.Genetic diversity patterns in Chinese soybean cultivars based on coefficient of parentage[J].Crop Science，2000,40:1780-1793.
[19] Gizlice Z，Carter Jr T E，Burton J W.Genetic diversity in North American soybean：I.Multivariate analysis of founding stock and relation to coefficient of parentage[J].Crop Science，1993，33:614-620.
[20]Gizlice Z，Carter Jr T E，Burton J W.Genetic base for North American public soybean cultivars released between 1947 and 1988[J].Crop Science，1994，34:1143-1151.
[21] Carter Jr T E，Nelson R L，Cregan P B，et al.Project SAVE (Soybean Asian Variety Evaluation)potential new sources of yield genes with no strings from USB，public，and private cooperative research[M]//Park B.Proceedings of the twenty-eighth soybean seed research conference 1998.Washington：American Seed Trade Association，Inc.，2000:68-83.
[22]Cui Z，Carter Jr T E，Burton J W，et al.Phenotypic diversity of modern Chinese and North American soybean cultivars[J].Crop Science，2001，41:1954-1967.
[23]Kisha T，Sneller C H，Diers B W.The relation of genetic distance and genetic variance in populations of soybean[J].Crop Science，1997，37:1317-1325.
[24]Helms T，Orf J，Vallad G.，et al.Genetic variance，coefficient of parentage，and genetic distance of six soybean populations[J].Theoretical and Applied Genetics，1997，94:20-26.
[25]Keim P，Beavis W，Schupp J，et al.Evaluation of soybean RFLP marker diversity in adapted germplasm[J].Theoretical and Applied Genetics，1992，85:205-212.
[26]Sneller C H，Miles J，Hoyt J M.Agronomic performance of soybean plant introduction and their genetic similarity to elite lines[J].Crop Science，1997，37:1595-1600.
[27]Kisha T，Diers B W，Hoyt J M，et al.Genetic diversity among soybean plant introductions and North American germplasm[J].Crop Science，1998，38:1669-1680.
[28] Nelson R L，Cregan P，Boerma H R，et al.DNA marker diversity among modern North American Chinese and Japanese soybean cultivars[M]//Agronomy Abstracts，ASA，Madison，WI，1998:164.
[29] Li Z，Nelson R L.Genetic diversity among soybean accessions from three countries measured by RAPDs[J].Crop Science，2001，41:1337-1347.
[30]Chen Y，Nelson R L.Relationship between origin and genetic diversity in Chinese soybean germplasm[J].Crop Science，2005,45:1645-1652.
[31]Li Z，Nelson R L.RAPD Marker diversity among cultivated and wild soybean accessions from four Chinese provinces[J].Crop Science，2002,42:1737-1744.

Memo

Memo:
-
Last Update: 2014-10-06