|Table of Contents|

Proteomic Analysis of Differentially Expressed Proteins in Developmental Soybean [Glycine max(L.)Merr.]Seed(PDF)

《大豆科学》[ISSN:1000-9841/CN:23-1227/S]

Issue:
2008年04期
Page:
556-563
Research Field:
Publishing date:

Info

Title:
Proteomic Analysis of Differentially Expressed Proteins in Developmental Soybean [Glycine max(L.)Merr.]Seed
Author(s):
ZHENG Rui 12XU Xiao-yan1LI Chun-mei1GAI Jun-yi1YU De-yue1
1National Center for Soybean Improvement,National Key Laboratory of Crop Genetics and Germplasm Enhancement,Nanjing Agricultural University,Nanjing 210095,Jiangsu;2College of Life Science,Ningxia University,Yinchuan 750021,Ningxia,China
Keywords:
Glycine max(L.)MerrMALDI-TOF-MSProteomicsSeeds
PACS:
S565.1
DOI:
10.11861/j.issn.1000-9841.2008.04.0556
Abstract:
A proteomic approach was applied in the study on the changes in proteins that occur during seed development in soybean [Glycine max(L.)Merr.] cv N2899.Protein expression at different developmental stages(15,20,30,40,50 DAF and mature seed)were compared using PDQuest software(Bio-Rad)after two-dimensional gel electrophoresis.About 337 low-salt extractable protein spots were resolved in gels.It was found that some proteins were present throughout the whole developmental stages,while others were associated with early seed filling or seed maturation.Among total spots 18 of 30 highly differentially expressed proteins were identified by MALDI-TOF-MS,querying peptide mass fingerprinting data in NCBInr database by Profound(http://www.prowl.rockefeller.edu).It was found that these identified proteins are mainly involved in seed maturation(e.g.conglycinin),stress tolerance(e.g.ascorbate peroxidase),cell division(e.g.Skp1),and proteins transportation(e.g.calreticulin).These results indicate that the seed development process is complex,and the identified genes would provide a basis for molecular elucidation of the temporal effects on protein accumulation in soybean seed.

References:

[1]Thanh V H,Shibasaki K.Major proteins of soybean seeds.A straightforward fractionation and their characterization[J].Journal of Agricultural and Food Chemistry,1976,24:1117-1121.

[2] Mazur B,Krebbers E,Tingey S.Gene discovery and product development for grain quality traits[J].Science,1999,285:372-375.
[3] Gianazza E,Eberini I,Arnoldi A,et al.A proteomic investigation of isolated soy proteins with variable effects in experimental and clinical studies[J].Biochemical and Molecular Actions of Nutrients,2003,9-14.
[4]Skylas DJ,Mackintosh J A,Cordwell S J,et al.Proteome approach to the characterisation of protein composition in the developing and mature wheat-grain endosperm[J].Journal of Cereal Science,2000,32:169-188.
[5]Wilkins M R,Sanchez J C,Gooley A A,et al.Progress with proteome projects:why all proteins expressed by a genome should be identified and how to do it[J].Biotech.Biotechnology & Genetic Engineering Reviews,1995,13:19 -50.
[6] Bove J,Jullien M,Grappin P.Functional genomics in the study of seed germination[J].Genome Biology,2002,3:1001-1002.
[7] Gallardo K,Signor C L,Vandekerckhove J,et al.Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation[J].Plant Physiology,2003,133:664-682.
[8] Mooney B P,Thelen J J.High-throughput peptide mass fingerprinting of soybean seed proteins:automated workflow and utility of UniGene expressed sequence tag databases for protein identification[J].Phytochemistry,2004,65:1733 -1744.
[9] Hajduch M,Ganapathy A,Stein J W,et al.A systematic proteomic study of seed filling in soybean.Establishment of high-resolution two-dimensional reference maps,expression profiles,and an interactive proteome database[J].Plant Physiology,2005,137,1397-1419.
[10]Ladin B F,Tierney M L,Meinke D W,et al.Developmental regulation of β-conglycinin in soybean axes and cotyledons[J].Plant Physiology,1987,84:30-41.
[11]Watson B S,Asirvatham V S,Wang L J,et al.Mapping the proteome of Barrel Medic(Medicago truncatula)[J].Plant Physiology,2003,131:1104-1123.
[12] Bradford M M.A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding[J].Analytical Biochemistry,1976,72:248-204.
[13] Neuhoff V,Arold N,Taube D,et al.Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250[J].Electrophoresis,1988,9:205-262.
[14] Finnie C,Melchior S,Roepstorff P,et al.Proteome analysis of grain filling and seed maturation in barley[J].Plant Physiology,2002,129:1308-1319.
[15] Porubleva L,Vander Velden K,Kothari S,et al.The proteome of maize leaves:use of gene sequences and expressed sequence tag data for identification of proteins of mass fingerprints[J].Electrophoresis,2001,22:1724-1738.
[16]Jofuku K D,Goldberg R B.Kunitz trypsin inhibitor genes are differentially expressed during the soybean life cycle and in transformed tobacco plants[J].Plant Cell,1989,1:1079-1093.
[17] Aoyamaa H,Alexandre D M Cavagisa,Tagab E M,et al.Endogenous lectin as a possible regulator of the hydrolysis of physiological substrates by soybean seed acid phosphatase[J].Phytochemistry,2001,58:221-225.
[18] Ferens M,Morawieka B.Rye germ acid phosphatase:properties of the enzyme and its activation by lectins[J].Phytochemistry,1985,24:2839-2842.
[19] Liu F,Ni W,Griffith M E,et al.The ASK1 and ASK2 genes are essential for Arabidopsis early development[J].Plant Cell,2004,16(1):5-20.
[20] Zhao D,Ni W,Feng B,et al.Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis[J].Plant Physiology,2003,133:203-217.
[21]Lechner E,Xie D,Grava S,et al.The AtRbx1 protein is part of plant SCF complexes,and its down-regulation causes severe growth and developmental defects[J].Journal of Biological Chemistry,2002,277:50069-50080.
[22]McDowell J M,Huang S,McKinney E C,et al.Structure and evolution of the actin gene family in Arabidopsis thaliana[J].Genetics,1996,142:587-602.
[23] McDowell J M,An Y Q,Huang S,et al.The Arabidopsis ACT7 actin gene is expressed in rapidly developing tissues and responds to several external stimuli[J].Plant Physiology,1996,111:699-711.
[24] Hammond C,Helenius A.Quality control in the secretory pathway[J].Current Opinion in Cell Biology,1995,7:523-529.
[25] M gelsvang S,Simpson D J.Changes in the levels of seven proteins involved in polypeptide folding and transport during endosperm development of two barley genotypes differing in storage protein localization[J].Plant Molecular Biology,1998,36:541-552.
[26] Chen F,Hayes P M,Mulrooney D M,et al.Identification and characterization of cDNA clones encoding plant calreticulum in barley[J].Plant Cell,1994,6:835-843.
[27]Asada K.Ascorbate peroxidase:a hydrogen peroxidase scavenging system in plants[J].Plant Physiology,1992,85:235-241.
[28] Noctor G,Foyer C H.Ascorbate and glutathione:keeping active oxygen under control[J].Annual Review of Plant Physiology,1998,49:249-279.
[29] Roberton M,Chandler P M.Pea dehydrins:identification,characterisation and expression[J].Plant Moleculer Biology,1992,19(6):1031-1044.
[30]Still D W,Kovach D A,Bradford K J.Development of desiccation tolerance during embryogenesis in rice(Oryza sativa)and wild rice(Zizania palustris)(dehydrin expression,abscisic acid content,and sucrose accumulation)[J].Plant Physiology,1994,104(2):431-438.
[31]Han B,Hughes D W,Galau G A,et al.Changes in late-embryogenesis-abundant(LEA)messengerRNAs and dehydrins during maturation and premature drying of Ricinus communis L[J].Seeds,1997,201(1):27-35.
[32]Weber H,Buchner P,Borisjuk L,et al.Sucrose metabolism during cotyledon development of Vicia faba L.is controlled by the concerted action of both sucrose-phosphate synthase and sucrose synthase:expression patterns,metabolic regulation and implications for seed development[J].Plant Journal,1996,9(6):841-850.
[33]Clauser K R,Baker P,Burlingame A L.Role of accurate mass measurement(+/10 ppm)in protein identification strategies employing MS or MS/MS and database searching[J].Analytical Chemistry,1999,71:2871-2882.

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Last Update: 2014-10-07