YANG Hong-yan,HE Qing-yuan,ZHANG Ying-hu,et al.Association Analysis of Seed Traits of Local and Bred Soybean Varieties in Sichuan and Chongqing[J].Soybean Science,2021,40(05):620-627.[doi:10.11861/j.issn.1000-9841.2021.05.0620]
川渝地区地方和育成大豆品种籽粒性状关联分析
- Title:
- Association Analysis of Seed Traits of Local and Bred Soybean Varieties in Sichuan and Chongqing
- Keywords:
- Soybean; Protein content; Oil content; 100-seed weight; Association analysis
- 文献标志码:
- A
- 摘要:
- 为挖掘川渝地区大豆品种籽粒蛋白质含量、油脂含量及百粒重与分子标记的关联位点,以232份川渝地区地方和育成材料构成的自然群体为试验材料,结合分布于大豆20条染色体的135个SSR分子标记检查所有材料的基因型,利用TASSEL 3.0软件中的混合线性模型对大豆籽粒蛋白质含量、油脂含量和百粒重进行关联分析。结果表明:在P<0.05显著水平且贡献率较高的情况下,2个环境中共检测49个关联位点。与蛋白质含量显著关联的位点有16个,贡献率总和为29.78%;与油脂含量相关的位点有19个,贡献率总和为41.94%;与百粒重相关的位点有14个,贡献率总和为13.92%。其中位点Satt554和Satt229与籽粒的蛋白质含量、油脂含量和百粒重性状同时存在关联。
- Abstract:
- In order to explore the association sites of soybean seed protein content,oil content,and 100-seed weight with SSR markers of local and bred soybean varieties in Sichuan and Chongqing region,232 natural populations composed of local and bred materials in Sichuan and Chongqing were used as experimental materials,and 135 SSR molecular markers distributed on 20 chromosomes of soybean were combined to examine the genotypes of all materials.The mixed linear model in TASSEL3.0 software was used to analyze the correlation between soybean seed protein content,oil content and 100-seed weight.The results showed that a total of 49 association sites were detected in the two environments when P<0.05 was significant and the contribution rate was high.There were 16 loci significantly associated with protein content,the total contribution rate was 29.78%,19 loci related to oil content,the total contribution rate was 41.94%,and 14 loci related to 100-seed weight,the total contribution rate was 13.92%.The loci satt554 and satt229 were simultaneously associated with seed protein content,oil content and 100-seed weight.
参考文献/References:
[1]杜佳兴,刘婧琦,盖志佳,等.播期对高蛋白大豆籽粒品质及产量的影响[J].中国农学通报,2019,35(35):31-34.(Du J X,Liu J Q,Gai Z J,et al.Sowing dates affect seed quality and yield of high protein soybean[J].Chinese Agricultural Science Bulletin,2019,35(35):31-34.)[2]齐波,杨加银.大豆籽粒蛋白质含量相关QTL定位研究进展[J].中国农学通报,2017,33(34):56-62.(Qi B,Yang J Y.Quantitative trait locus mapping of seed protein content in soybean:Progress[J].Chinese Agricultural Science Bulletin,2017,33(34):56-62.)[3]Leamy L J,Zhang H Y,Li C B,et al.A genome-wide association study of seed composition traits in wild soybean (Glycine soja)[J].BMC Genomics,2017,18(1):3-15.[4]刘家伶,张君,韩笑,等.基于高密度大豆SNP遗传图谱的蛋白质和脂肪含量QTL定位及基因注释[J].大豆科学,2021,40(2):149-158.(Liu J L,Zhang J,Han X,et al.Protein and fat content QTL mapping and gene annotation based on high-density soybean SNP genetic map[J].Soybean Science,2021,40(2):149-158.)[5]Carpentieri-Pipolo V,Pipolo A E,Abdel-Haleem H,et al.Identi-fication of QTLs associated with limited leaf hydraulic conductance in soybean[J].Euphytica,2012,186(3):679-686.[6]Qi Z M,Wu Q,Han X,et al.Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes[J].Euphytica,2011,179:499-514.[7]Mao T T,Jiang Z F,Han Y P,et al.Identification of quantitative trait loci underlying seed protein and oil contents of soybean across multi-genetic backgrounds and environments[J].Plant Breeding,2013,132(6):630-641.[8]Chapman A,Pantalone V R,Ustun A,et al.Quantitative trait loci for agronomic and seed quality traits in an F2 and F4:6 soybean population[J].Euphytica,2003,129(3):387-393.[9]Chung J,Babka H L,Graef G L,et al.The seed protein,oil,and yield QTL on soybean linkage group I[J].Crop Science,2003,43(3):1053-1067.[10]Lee S H,Park K Y,Lee H S,et al.Genetic mapping of QTLs conditioning soybean sprout yield and quality[J].Theoretical and Applied Genetics,2001,103(5):702-709.[11]于志远,王伟威,魏崃,等.利用关联分析方法挖掘自然群体中大豆油分和蛋白质含量相关SSR标记[J].大豆科学,2015,34(6):977-981.(Yu Z Y,Wang W W,Wei L,et al.Exploiting SSR loci related with soybean oil and protein content by using association analysis in natural population[J].Soybean Science,2015,34(6):977-981.)[12]王自力,郭呈宇,张吉顺,等.江淮地区大豆籽粒高蛋白含量新品系的发掘与遗传关系分析[J].中国油料作物学报,2015,37(6):780-788.(Wang Z L,Guo C Y,Zhang J S,et al.Identification and genetic relationship of elite soybean breeding lines with high seed protein content in Yangtze-Huai River Valleys[J].Chinese Journal of Oil Crop Sciences,2015,37(6):780-788.)[13]齐照明,侯萌,韩雪,等.东北地区大豆主栽品种油份蛋白含量的关联分析[J].中国油料作物学报,2014,36(2):168-174.(Qi Z M,Hou M,Han X,et al.Association analysis of soybean oil and protein content for northeast soybean cultivar in China[J].Chinese Journal of Oil Crop Sciences,2014,36(2):168-174.)[14]赵慧艳,林春雨,梁晓宇,等.黑龙江省大豆推广品种农艺品质性状优异等位变异发掘[J].中国油料作物学报,2019,41(5):688-695.(Zhao H Y,Lin C Y,Liang X Y,et al.Mining of novel alleles of agronomic traits and quality traits in soybean commercial varieties in Heilongjiang Province [J].Chinese Journal of Oil Crop Sciences,2019,41(5):688-695.)[15]Yang H Y,Wang W B,He Q Y,et al.Identifying a wild allele conferring small seed size,high protein content and low oil content using chromosome segment substitution lines in soybean[J].Theoretical and Applied Genetics,2019,132:2793-2807.[16]Edward Buckler Lab[EB/OL].http://www.maizegenetics.net/bioinformatics/ta-ssel,2011-10-22.[17]文自翔,赵团结,郑永战,等.中国栽培和野生大豆农艺及品质性状与 SSR 标记的关联分析Ⅱ.优异等位变异的发掘[J].作物学报,2008,34(8):1339-1349.(Wen Z X,Zhao T J,Zheng Y Z,et al.Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China:II.exploration of elite alleles[J].Acta Agronomica Sinica,2008,34(8):1339-1349.)[18]何庆元,向仕华,杨华伟,等.川渝地区地方和育成大豆品种SSR标记多样性分析[J].中国油料作物学报,2018,40(3):326-334.(He Q Y,Xiang S H,Yang H W,et al.Diversity analysis of SSR of local and bred soybean varieties in Sichuan and Chongqing[J].Chinese Journal of Oil Crop Sciences,2018,40(3):326-334.)[19]任丙新.大豆蛋白质、脂肪及脂肪酸主要组分含量QTL定位[D].北京:中国农业科学院,2020:1-58.(Ren B X.QTL mapping of soybean protein content,oil content and fatty acid contents[D].Beijing:Chinese Academy of Agricultural Sciences Dissertation,2020:1-58.)[20]Hyten D L,Pantalone V R,Sams C E,et al.Seed quality QTL in a prominent soybean population[J].Theoretical and Applied Genetics,2004,109(3):552-561.[21]Csanadi G,Vollmann J,Stift G,et al.Seed quality QTLs identified in a molecular map of early maturing soybean[J].Theoretical and Applied Genetics,2001,103(6-7):912-919.[22]Funatsuki H,Kawaguchi K,Matsuba S,et al.Mapping of QTL ass-ociated with chilling tolerance during reproductive growth in soybean[J].Theoretical and Applied Genetics,2005,111(5):851-861.[23]Wang W B,He Q Y,Yang H Y,et al.Identification of QTL/seg-ments related to seed-quality traits in G.soja using chromosome segment substitution lines[J].Plant Genetic Resources,2014,12(S1):S65-S69.[24]陈庆山,蒋洪蔚,孙殿君,等.利用野生大豆染色体片段代换系定位百粒重QTL[J].大豆科学,2014,33(2):154-160.(Chen Q S,Jiang H W,Sun D J,et al.QTL mapping for 100-seed weight using wild soybean chromosome segment substitution lines[J].Soybean Science,2014,33(2):154-160.)
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备注/Memo
收稿日期:2020-03-04